Environmental Genomics Laboratory
Department of Biochemical Engineering and Biotechnology,
Indian Institute of Technology Delhi
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Selected Publications
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S. Sharma* (2024) Crafting friendly microbiomes as plant bodyguards against pests. Trends in Plant Science, In Press. DOI:10.1016/j.tplants.2024.10.001
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A. S. F. Araujo*, S. Sharma, J. P. Pinheiro, A. C. de Almeida Lopes (2024) Beyond plant genetics: Microbiome enhancing heterosis in plants. Trends in Plant Science, In Press. DOI:10.1016/j.tplants.2024.07.015
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S. Khatri, P. Sazinas, M. L. Strube, L. Ding, S. Dubey, Y. S. Shivay, S. Sharma*, L. Jelsbak* (2023) Pseudomonas is a key player in conferring disease suppressiveness in organic farming. Plant and Soil, In Press. DOI:10.1007/s11104-023-05927-6
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P. Chaudhary, A. Bhattacharjee, S. Khatri, R. C. Dalal, P. M. Kopittke, S. Sharma* (2024) Delineating the soil physicochemical and microbiological factors conferring disease-suppression in organic farms. Microbiological Research, 289. DOI:10.1016/j.micres.2024.127880
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R. Devrani, P. Vangla*, S. Sharma* (2024) Exploring the potential of native urease-producing bacteria of hilly terrain for soil strength enhancement. Geomicrobiology Journal, 41(8):818-829. DOI:10.1080/01490451.2024.2388823
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A. Dutta*, R. Tyagi, S. Sharma, M. Datta (2024) Hyperspectral reflectance assessment for preliminary identification of degraded soil zones in industrial sites, India. Photogrammetric Engineering and Remote Sensing, 90(8):503-509. DOI:10.14358/PERS.24-00005R2
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S. Dixit, S. Varshney, D. Gupta, S. Sharma* (2024) Factors affecting biofilm formation by bacteria on fabrics. International Microbiology, 27(4):1111-1123. DOI:10.1007/s10123-023-00460-z
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S. Srivastava, A. Bhattacharjee, S. Dubey, S. Sharma* (2024) Bacterial exopolysaccharide amendment improves the shelf life and functional efficacy of bioinoculant under salinity stress. Journal of Applied Microbiology, 135(7). DOI:10.1093/jambio/lxae166
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V. L. Shrivas, A. K. Choudhary, P. Hariprasad, S. Sharma* (2024) Transmission of antibiotic resistance through organic amendments in arable land: A 3-year field study with pigeonpea–wheat cropping system. Journal of Hazardous Materials, 471:134378. DOI:10.1016/j.jhazmat.2024.134378
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A. S. F. Araujo*, A. P. de Araujo Pereira, D. P. da Costa, E. V. de Medeiros, F. F. Araujo, S. Sharma, L. W. Mendes (2024) Enhancing plant resilience to pathogens through strategic breeding: Harnessing beneficial bacteria from the rhizosphere for progeny protection. Rhizosphere, 30:100890. DOI:10.1016/j.rhisph.2024.100890
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A. Dutta, R. Tyagi, A. Chattopadhyay, D. Chatterjee, A. Sarkar, B. Lall, S. Sharma* (2024) Early detection of wilt in Cajanus cajan using satellite hyperspectral images: Development and validation of disease-specific spectral index with integrated methodology. Computers and Electronics in Agriculture, 219:108784. DOI:10.1016/j.compag.2024.108784
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S. Khatri, A. Bhattacharjee, Y. S. Shivay, S. Sharma* (2024) Transplantation of soil from organic field confers disease suppressive ability to conducive soil. World Journal of Microbiology and Biotechnology, 40(4):112. DOI:10.1007/s11274-024-03895-2
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V. L. Shrivas, A. K. Choudhary, S. Shidture, A. Rambia, P. Hariprasad, A. Sharma*, S. Sharma* (2024) Organic amendments modulate the crop yield and rhizospheric bacterial community diversity: a 3-year field study with Cajanus cajan. International Microbiology, 27(2):477-490. DOI:10.1007/s10123-023-00396-4
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V. L. Shrivas, A. K. Choudhary, A. Dass, P. Hariprasad, S. Sharma* (2024) Impact of different farming practices on soil nutrients and functional bacterial guilds in pigeonpea-wheat crop rotation. Journal of Soil Science and Plant Nutrition, 24(1):684-699. DOI:10.1007/s42729-023-01575-y
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S. Srivastava, R. Tyagi, S. Sharma* (2024) Seed biopriming as a promising approach for stress tolerance and enhancement of crop productivity: a review. Journal of the Science of Food and Agriculture, 104(3):1244-1257. DOI:10.1002/jsfa.13048
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A. Sharma*, B. Gupta, A. Ghosh, S. Sharma, A. J. Rodriguez-Morales, A. Zumla, Z. A. Memish (2024) Raising awareness and mitigating risk of transmission of antimicrobial resistance during the upcoming 2024 Gangasagar religious mass gathering. New Microbes and New Infections, 56:101213. DOI:10.1016/j.nmni.2023.101213
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S. Dubey, A. Bhattacharjee, S. Pradhan, A. Kumar, S. Sharma* (2023) Composition of fungal communities upon multiple passaging of rhizosphere microbiome for salinity stress mitigation in Vigna radiata. FEMS Microbiology Ecology, 99(11):fiad132. DOI:10.1093/femsec/fiad132
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A. Dutta, P. Chaudhary, S. Sharma, B. Lall* (2023) Satellite hyperspectral imaging technology as a potential rapid pollution assessment tool for urban landfill sites: Case study of Ghazipur and Okhla landfill sites in Delhi, India. Environmental Science and Pollution Research, 30:116742-116750. DOI:10.1007/s11356-022-22421-1
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A. Bhattacharjee, S. Dubey, S. Sharma* (2023) "Next-generation bioformulations" for plant growth promotion and stress mitigation: A promising approach for sustainable agriculture. Journal of Plant Growth Regulation, 42(10):6741-6759. DOI:10.1007/s00344-023-10996-z
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S. Khatri, P. Chaudhary, Y. S. Shivay, S. Sharma* (2023) Role of fungi in imparting general disease suppressiveness in soil from organic field. Microbial Ecology, 82(3):2047-2059. DOI:10.1007/s00248-023-02211-z
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S. Mishra*, S. Sharma* (2023) Temporal dynamics of endophytic bacterial and fungal communities during spike development in Piper longum L. Physiology and Molecular Biology of Plants, 29(8):1117-1134. DOI:10.1007/s12298-023-01352-2
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S. Dixit, S. Varshney, D. Gupta, S. Sharma* (2023) Textiles as fomites in the healthcare system. Applied Microbiology and Biotechnology, 107(12):3887-3897. DOI:10.1007/s00253-023-12569-2
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G. Anand, V. L. Shrivas, S. Dubey, A. Bhattacharjee, S. Sharma* (2023) Stress-buster Enterobacter sp. alleviates salinity stress in Cajanus cajan together with impacting its rhizospheric microbiome. South African Journal of Botany, 156:202-212. DOI:10.1016/j.sajb.2023.02.040
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S. Srivastava, S. Sharma* (2023) Insight into exopolysaccharide-mediated stress tolerance in plants: A feasible approach towards the development of next-generation bioformulations. Journal of Soil Science and Plant Nutrition, 23(1):22-33. DOI:10.1007/s42729-022-00958-x
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V. L. Shrivas, A. K. Choudhary, P. Hariprasad, S. Sharma* (2023) Nutrient concentrations affect the antimicrobial resistance profiles of cattle manures. Environmental Science and Pollution Research, 30(10):25141-25147. DOI:10.1007/s11356-021-16700-6
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S. Khatri, S. Dubey, Y. S. Shivay, L. Jelsbak*, S. Sharma* (2023) Organic farming induces changes in bacterial community and disease suppressiveness against fungal phytopathogens. Applied Soil Ecology, 181:104658. DOI:10.1016/j.apsoil.2022.104658
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Priyanka, A. Bhattacharjee, P. Srivastava, S. Sharma* (2022) Employing mutants to study the role of a three-membered bacterial consortium in growth promotion of Cajanus cajan. Journal of Microbiological Methods, 202:106589. DOI:10.1016/j.mimet.2022.106589
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S. Pradhan, R. Tyagi, S. Sharma* (2022) Combating biotic stresses in plants by synthetic microbial communities: Principles, applications and challenges. Journal of Applied Microbiology, 133(5):2742-2759. DOI:10.1111/jam.15799
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Priyanka, S. Srivastava, S. Sharma* (2022) Metabolomic insight into the synergistic mechanism of action of a bacterial consortium in plant growth promotion. Journal of Bioscience and Bioengineering, 134(5):399-406. DOI:10.1016/j.jbiosc.2022.07.013
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U. Singh, P. Roy, S. Sharma* (2022) Bacterial inoculants as effective agents in minimising the non-target impact of azadirachtin pesticide and promoting plant growth of Vigna radiata. Archives of Microbiology, 204(9):555. DOI:10.1007/s00203-022-03162-8
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S. Dubey, A. Anand, A. Bhattacharjee, S. Khatri, F. L'Haridon, L. Weisskopf*, S. Sharma* (2022) Understanding the mechanism of stress-acclimatized rhizospheric microbiome towards salinity stress mitigation in Vigna radiata: a focus on the emission of volatiles. Environmental and Experimental Botany, 201:104988. DOI:10.1016/j.envexpbot.2022.104988
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U. Singh, A. K. Choudhary, Varatharajan T., S. Sharma* (2022) Agricultural management practices affect the abundance of markers of phosphorus cycle in soil: Case study with pigeonpea and soybean. Journal of Soil Science and Plant Nutrition, 22(3):3012-3020. DOI:10.1007/s42729-022-00863-3
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S. Varshney, S. Sharma, D. Gupta* (2022) Surveillance of bacterial load and multi-drug resistant bacteria on bedsheets in a primary health care unit. International Journal of Environmental Health Research, 32(9):2040-2051. DOI:10.1080/09603123.2021.1935780
Coverage in Current Science (July 2021), 121:187 -
R. Tyagi, S. Pradhan, A. Bhattacharjee, S. Dubey, S. Sharma* (2022) Management of abiotic stresses by microbiome-based engineering of the rhizosphere. Journal of Applied Microbiology, 133(2):254-272. DOI:10.1111/jam.15552
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D. Mallick, S. Sharma, D. Gupta* (2022). Transfer of bacteria between fabric and surrogate skin. American Journal of Infection Control, 50(7):758-763. DOI:10.1016/j.ajic.2021.10.040
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S. Dubey, S. Khatri, A. Bhattacharjee, S. Sharma* (2022) Multiple passaging of rhizospheric microbiome enables mitigation of salinity stress in Vigna radiata. Plant Growth Regulation, 97(3):537-549. DOI:10.1007/s10725-022-00820-1
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R. Sharma, L. Gal, D. Garmyn, D. Bru, S. Sharma, P. Piveteau* (2022) Plant growth promoting bacterial consortium induces shifts in indigenous soil bacterial communities and controls Listeria monocytogenes in rhizospheres of Cajanus cajan and Festuca arundinacea. Microbial Ecology, 84(1):106-121. DOI:10.1007/s00248-021-01837-1
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S. Varshney, S. Kajale, S. Khatri, D. Gupta, A. Sharma*, S. Sharma* (2022) Temporal variation in bacterial community profile on patients' bedsheets in a primary healthcare unit. Archives of Microbiology, 204(6):308. DOI:10.1007/s00203-022-02921-x
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U. Singh, A. K. Choudhary, S. Sharma* (2022) A 3-year field study reveals that agri-management practices drive the dynamics of dominant bacterial taxa in the rhizosphere of Cajanus cajan. Symbiosis, 86(2):215-227. DOI:10.1007/s13199-022-00834-3
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S. Mishra*, Priyanka, S. Sharma* (2022) Metabolomic insights into endophyte-derived bioactive compounds. Frontiers in Microbiology, 13:835931. DOI:10.3389/fmicb.2022.835931
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S. Goel, S. Dubey, S. Sharma, J. Jacob* (2022) Biodegradable and pH-responsive piperazine-based aliphatic polyesters with tunable hydrophilicity. European Polymer Journal, 162:110919. DOI:10.1016/j.eurpolymj.2021.110919
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A. Bhattacharjee, S. Dubey, S. Sharma* (2022) Storage of soil microbiome for application in sustainable agriculture: prospects and challenges. Environmental Science and Pollution Research, 29(3):3171-3183. DOI:10.1007/s11356-021-17164-4
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M. Jangir, S. Sharma, S. Sharma* (2021) Development of next-generation formulation against Fusarium oxysporum and unraveling bioactive antifungal metabolites of biocontrol agents. Scientific Reports, 11(1):22895. DOI:10.1038/s41598-021-02284-1
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S. Dubey, S. Sharma* (2021) Rhizospheric engineering by plant-mediated indirect selection of microbiome for agricultural sustainability. Critical Reviews in Plant Sciences, 40(5):379-397. DOI:10.1080/07352689.2021.1959137
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S. Tewari, S. Sharma* (2021) An improved high-throughput method for assessing the impact of bioformulation on plant parameters: Case study with pigeonpea seeds. Physiological and Molecular Plant Pathology, 115:101657. DOI:10.1016/j.pmpp.2021.101657
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G. Anand, A. Bhattacharjee, V. L. Shrivas, S. Dubey, S. Sharma* (2021) ACC deaminase positive Enterobacter-mediated mitigation of salinity stress, and plant growth promotion of Cajanus cajan: a lab to field study. Physiology and Molecular Biology of Plants, 27(7):1547-1557. DOI:10.1007/s12298-021-01031-0
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S. Khatri, S. Sharma* (2021) How does organic farming shape the soil- and plant-associated microbiota? Symbiosis, 84(3):391-398. DOI:10.1007/s13199-021-00767-3
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U. Singh, A. K. Choudhary, S. Sharma* (2021) Agricultural practices modulate the bacterial communities, and nitrogen cycling bacterial guild in rhizosphere: field experiment with soybean. Journal of the Science of Food and Agriculture, 101(7):2687-2695. DOI:10.1002/jsfa.10893
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S. Mishra*, A. Bhattacharjee, S. Sharma* (2021) An ecological insight into the multifaceted world of plant-endophyte association. Critical Reviews in Plant Sciences, 40(2):127-146. DOI:10.1080/07352689.2021.1901044
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R. Sharma, V. L. Shrivas, S. Sharma* (2021) Effect of substitution of chemical fertilizer by bioinoculants on plant performance and rhizospheric bacterial community: Case study with Cajanus cajan. Brazilian Journal of Microbiology, 52(1):373-386. DOI:10.1007/s42770-020-00418-7
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S. Varshney, A. Sain, D. Gupta, S. Sharma* (2021) Factors affecting bacterial adhesion on selected textile fibres. Indian Journal of Microbiology, 61(1):31-37. DOI:10.1007/s12088-020-00903-5
Coverage in Current Science (October 2020), 119:1071 -
G. Anand, V. Goel, S. Dubey, S. Sharma* (2021) Tailoring the rhizospheric microbiome of Vigna radiata by adaptation to salt stress. Plant Growth Regulation, 93(1):79-88. DOI:10.1007/s10725-020-00667-4
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M. Jangir, S. Sharma, S. Sharma* (2020) Synergistic effect of oilseed cake and biocontrol agent in the suppression of Fusarium wilt in Solanum lycopersicum. Brazilian Journal of Microbiology, 51(4):1929-1939. DOI:10.1007/s42770-020-00344-8
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S. Tewari, S. Sharma* (2020) Rhizobial-metabolite based biocontrol of fusarium wilt in pigeon pea. Microbial Pathogenesis, 147:104278. DOI:10.1016/j.micpath.2020.104278
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U. Singh, A. K. Choudhary, S. Sharma* (2020) Comparative performance of conservation agriculture vis-a-vis organic and conventional farming, in enhancing plant attributes and rhizospheric bacterial diversity in Cajanus cajan: A field study. European Journal of Soil Biology, 99:103197. DOI:10.1016/j.ejsobi.2020.103197
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S. Khatri, P. Sazinas, Y. S. Shivay, S. Sharma*, L. Jelsbak* (2020) Complete genome sequence of Pseudomonas sp. strain SK, isolated from organic wheat rhizosphere. Microbiology Resource Announcements, 9(26):e00510-20. DOI:10.1128/mra.00510-20
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S. Tewari, S. Sharma* (2020) Rhizobial exopolysaccharides as supplement for enhancing nodulation and growth attributes of Cajanus cajan under multi-stress conditions: A study from lab to field. Soil and Tillage Research, 198:104545. DOI:10.1016/j.still.2019.104545
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N. Yadav, S. Sharma* (2020) Pollution shapes the bacterial community of a river: a case study. International Journal of Environmental Science and Technology, 17(4):2003-2016. DOI:10.1007/s13762-019-02474-5
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R. Sharma, L. Gal, D. Garmyn, V. S. Bisaria, S. Sharma*, P. Piveteau* (2020) Evidence of biocontrol activity of bioinoculants against a human pathogen, Listeria monocytogenes. Frontiers in Microbiology, 11:350. DOI:10.3389/fmicb.2020.00350
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R. Sharma, V. Pooniya, V. S. Bisaria, K. Swarnalakshmi, S. Sharma* (2020) Bioinoculants play a significant role in shaping the rhizospheric microbial community: a field study with Cajanus cajan. World Journal of Microbiology and Biotechnology, 36(3):44. DOI:10.1007/s11274-020-02818-1
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S. Tewari, V. Pooniya, S. Sharma* (2020) Next generation bioformulation prepared by amalgamating Bradyrhizobium, cell free culture supernatant, and exopolysaccharides enhances the indigenous rhizospheric rhizobial population, nodulation, and productivity of pigeon pea. Applied Soil Ecology, 147:103363. DOI:10.1016/j.apsoil.2019.103363
Coverage in Current Science (March 2020), 118:695 -
S. Varshney, P. Pandey, D. Gupta*, S. Sharma (2020) Role of fabric properties, moisture and friction in transfer of bacteria from fabric to fabric. Textile Reseach Journal, 90(3-4):478-485. DOI:10.1177/0040517519866956
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G. Anand, V. S. Bisaria, S. Sharma* (2020) Impact of abiotic stressors on native rhizospheric bacterial community of Cajanus cajan. Journal of Basic Microbiology, 60(1):4-13. DOI:10.1002/jobm.201900378
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M. Jangir, R. Pathak, A. Sharma, S. Sharma, S. Sharma* (2019) Volatiles as strong markers for antifungal activity against Fusarium oxysporum f. sp. lycopersici. Indian Phytopathology, 72(4):681-687. DOI:10.1007/s42360-018-0073-4
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S. Varshney, A. Sain, G. Anand, D. Gupta, S. Sharma* (2019) A robust method for nucleic acid extraction from fabrics to study bacterial diversity. Journal of Biosciences, 44(5):123. DOI:10.1007/s12038-019-9935-x
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M. Jangir, S. Sharma, S. Sharma* (2019) Target and non-target effects of dual inoculation of biocontrol agents against Fusarium wilt in Solanum lycopersicum. Biological Control, 138:104069. DOI:10.1016/j.biocontrol.2019.104069
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S. Varshney, S. Sharma, D. Gupta* (2019) Factors affecting bacterial load on nurses' white coats. Journal of Hospital Infection, 102(4):470-471. DOI:10.1016/j.jhin.2019.02.014
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M. Jangir, R. Pathak, S. Sharma, S. Sharma (2018) Biocontrol mechanisms of Bacillus sp., isolated from tomato rhizosphere against Fusarium oxysporum f. sp. lycopersici, Biological Control, 123: 60-70.
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R. Sharma, M G Dastidar, S. Sharma (2017) Biosorption of azodyes by Aspergillus tamarii, Indian Journal of Biotechnology,16: 578-585.
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V. Walvekar, S. Bajaj, D. K. Singh, S. Sharma (2017) Ecotoxicological assessment of biological and chemical pesticides on rhizosphere community structure and function of Vigna radiata, Environmental Science and Pollution Research, 24: 17175-17186.
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R. Gupta, V. S.Bisaria, S. Sharma (2016) Response of rhizospheric bacterial communities of Cajanuscajan to application of bioinoculants and chemical fertilizers: A comparative study, European Journal of Soil Biology, 75:107-114.
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R. Sharma, S. Sharma (2015) Biosorption of alizarin by Burkholderia sp. International Journal of Current Microbiology and Applied Science,4:112-122.
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S. Singh, R. Gupta, S. Sharma (2015) Effects of chemical and biological pesticides on plant growth parameters and rhizospheric microbial community structure in Vigna radiata. Journal of Hazardous Material.291: 102-110.
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S. Singh, R. Gupta, M. Kumari, S. Sharma (2015) Non-target effects of chemical pesticides and bio-pesticide on rhizospheric microbial community structure and function in Vigna radiata. Environmental Science and Pollution Research. 22:11290-11300.
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S. Tipre, P. K. Pindi, S. Sharma (2015) Biotechnological potential of a halobacterium of family Bacillaceae. Indian Journal of Biotechnology,14:65-71.
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R. Gupta, V. S. Bisaria, S. Sharma (2015) Effect of agricultural amendments on Cajanus cajan (pigeon pea) and its rhizospheric microbial communities – a comparison between chemical fertilizers and bioinoculants. PLoSONE10(7):e0132770.doi:10.1371/journal.pone.0132770.
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S. Gupta, R. Gupta, S. Sharma (2014) Impact of pesticides on plant growth promotion and non-target microbes: comparison between chemical- and bio-pesticides. Ecotoxicology 23:1015–1021.
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S. Dhamaniya, H. S. Jaggi, M. Nimiya, S. Sharma, B. K. Satapathy, J. Jacob (2014) Synthesis, characterization and biodegradation studies of chain-coupled polyesters based on tartaric acid. Polymer Engineering and Science, 63: 680-688.
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R. Gupta, N. Mathimaran, A. Wiemken, T. Boller, V. S. Bisaria, S. Sharma (2014) Non-target effects of bioinoculants on rhizospheric microbial communities of Cajanus cajan, Applied Soil Ecology,76:26-33.
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K. Kundu, I. Bergmann, M. Klocke, S. Sharma, T. R. Sreekrishnan (2014) Influence of hydrodynamic shear on performance and microbial community structure of a hybrid anaerobic reactor, J Chem Tech and Biotech, 89:462-470.
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K.Kundu, I. Bergmann, M.Klocke; S. Sharma, T. R.Sreekrishnan (2014) Impact of abrupt temperature increase on the performance of an anaerobic hybrid bioreactor and its intrinsic microbial community. Bioresource Technology,168:72-79.
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K. Kundu, S. Sharma, T. R. Sreekrishnan (2013) Changes in microbial communities in a hybrid anaerobic reactor with changes in organic loading rate and temperature. Bioresource Technology, 129: 538–547.
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R. Gupta, V. S.Bisaria, S Sharma (2013) Bioinoculants: more than just plant growth promoting agents. Endocytobiosis and Cell Research, 24: 8-13.
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K. Kundu, I. Bergmann, S. Hahnke, M. Klocke, S. Sharma, T. R. Sreekrishnan (2013) Carbon source - A strong determinant of microbial community structure and performance of an anaerobic reactor. Journal of Biotechnology, 168: 616–624.
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S. Gupta, R. Gupta, S. Sharma (2013) Impact of chemical- and bio-pesticides on bacterial diversity in rhizosphere of Vigna radiata. Ecotoxicology, 22: 1479-1489.
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R. Gupta, D. Bru, V. S. Bisaria, L. Philippot, S. Sharma (2012) Responses of Cajanuscajan and rhizospheric N-cycling communities to bioinoculants, Plant and Soil, 358: 143-154.
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K. Kundu, S. Sharma, T. R. Sreekrishnan (2012) Effect of operating temperatures on the microbial community profiles in a high cell density anaerobic bioreactor, Bioresource Technology,118: 502–511.
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B. Arun, B. Gopinath, S. Sharma (2012) Plant growth promoting potential of free-living diazotrophs isolated from rhizosphere of Cassia occidentalis, World Journal of Microbiology and Biotechnology, 28: 2849-2857.
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S. Sharma, R. Mehta, R. Gupta, M. Schloter (2012) Improved protocol for the extraction of bacterial mRNA from soils, Journal of Microbiological Methods, 91: 62-64.
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A.Kotzerke, M.Fulle, S. Sharma, K.Kleineidam, G.Welzl, M. Lamshöft, M.Schloter, B. M. Wilke (2011) Alterations in total microbial activity and nitrification rates in soil due to amoxicillin spiked pig manure. Journal of Plant Nutrition and Soil Science. 174, 56–64.
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K.Kleineidam*, S. Sharma*, A. Kotzerke, H.Heuer, S. Thiele-Bruhn, K.Smalla, B. M. Wilke, M.Schloter(2010) Effect of sulfadiazine on abundance and diversity of denitrifying bacteria by determining nirK and nirS genes in two arable soils. Microbial Ecology, 60, 703-707. *Equal contribution.
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Schauß K., Focks A., Leininger S., Kotzerke A., Heuer H., Thiele-Bruhn S., Sharma S., Wilke B. M., Matthies M., Smalla K., Munch J. C., Amelung W., Kaupenjohann M., Schleper C., Schloter M. (2009) Dynamics and functional relevance of ammonia-oxidizing archaea in agricultural soils. Environmental Microbiology, 11:446-456.
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Kotzerke, S. Sharma, K. Schauß, H. Heuer, S. Thiele-Bruhn, K. Smalla, B.M. Wilke, M. Schloter (2008) Alterations in soil microbial activity and N-transformation processes due to sulfadiazine loads in pig-manure. Environ Pollution 153: 315-322.
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M. K. Aneja, S. Sharma*, F. Fleischmann, S. Stich, W. Heller, G. Bahnweg, J. C. Munch and M. Schloter (2007) Influence of ozone on litter quality and its subsequent effects on the structure of colonizing microbial communities. Microbial Ecology 54: 151-60, *Corresponding author.
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S. Sharma, V. Radl, B. Hai, K. Kloos, M. Mrkonjic Fuka, M. Engel, K. Schauss and M. Schloter (2007) Quantification of functional genes from prokaryotes in soil by PCR. Journal of Microbiological Methods 68: 445-452.
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J. Demanou, S. Sharma*, A. Weber, B.-M. Wilke, T. Njine, A. Monkiedje, J. C. Munch and M. Schloter (2006) Shifts in microbial community functions as a result of combined application of copper and mefenoxam. FEMS Microbiology Letters 260: 55-62, *Corresponding author.
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S. Sharma, Z. Szele, R. Schilling, J. C. Munch and M. Schloter (2006) Influence of freeze-thaw on the structure and function of microbial communities in soil. Applied and Environmental Microbiology 72: 2148-2154.
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M. K. Aneja, S. Sharma, F. Fleischmann, S. Stich, W. Heller, G. Bahnweg, J. C. Munch and M. Schloter (2006) Microbial colonization of beech and spruce litter – influence of soil type and litter quality on the composition of microbial populations involved in the turnover process. Microbial Ecology 52: 127-135.
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J. Demanou, S. Sharma, U. Doerfler, R. Schroll, K. Pritsch, T. Njine, U. Bausenwein, A. Monkiedje, J. C. Munch and M. Schloter (2006) Structural and functional diversity of soil microbial communities as a result of combined applications of copper and mefenoxam. Soil Biology and Biochemistry 38: 2381-2389.
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S. Sharma, M. K. Aneja, J. Mayer, J. C. Munch and M. Schloter (2005) Characterization of bacterial community structure in rhizosphere soil of grain legumes. Microbial Ecology 49: 407-415.
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S. Sharma, M. K. Aneja, J. Mayer, J. C. Munch and M. Schloter (2005) Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes. Applied and Environmental Microbiology 71: 2001-2007.
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S. Sharma, M. K. Aneja, J. Mayer, M. Schloter and J. C. Munch (2004) RNA fingerprinting of microbial community in the rhizosphere soil of grain legumes. FEMS Microbiology Letters 240: 181-186.
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M. K. Aneja, S. Sharma, J. Mayer, J. C. Munch and M. Schloter (2004) RNA fingerprinting – a new method to screen for differences in plant litter degrading microbial communities. Journal of Microbiological Methods 59: 223-231.
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* Corresponding author
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​ Chapters In Books (Invited)
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V. L. Shrivas, P. Hariprasad, A. K. Choudhary, S. Sharma (2022) Antimicrobial resistance in agriculture: an emerging threat to the ecosystem. In: Microbes in Agri-Forestry Biotechnology, CRC Press, In Press.
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S. Khatri, S. Dubey, S. Sharma (2022) Microbiome-based approaches to enhance soil health in arable land. In: New and Future Developments in Microbial Biotechnology and Bioengineering (ed. H.B. Singh & A. Vaishnav) Elsevier, pp 333-344. https://doi.org/10.1016/B978-0-323-85163-3.00017-X
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K. Kundu, T. R. Sreekrishnan, S. Sharma (2021) Biological Wastewater Treatment to achieve Pollution Control and Resource Recovery: Role of Anaerobic Digestion. In: Microbial Ecology of Wastewater Treatment Plants (ed. M.P. Shah, S.R. Couto), Elsevier, pp 493-510. https://doi.org/10.1016/B978-0-12-822503-5.00016-3; ISBN 9780128225035.
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U. Singh, V. A. Walvekar, S. Sharma (2020) Microbiome as sensitive markers for risk assessment of pesticides. In: Pesticides in Crop Production: Physiological and Biochemical Action, Wiley & Sons, USA, pp. 89-108. https://doi.org/10.1002/9781119432241.ch6; Print ISBN:9781119432197
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S. Khatri, A. Bhattacharjee, S. Sharma (2020) “Omics” approaches for understanding soil suppressiveness in agriculture. In: Omics Science for Rhizosphere Biology (ed. R.N. Pudake, B. B. Sahi, M. Kumari & A.K. Sharma), Springer, Singapore, pp 53-72. DOI: 10.1007/978-981-16-0889-6_4; Print ISBN 978-981-16-0888-9
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S. Tewari, S. Sharma (2019) Molecular techniques for diagnosis of bacterial plant pathogens. In: Microbial diversity in the Genomic Era (ed. S. Das, H.R. Dash) Academic Press, Elsevier, pp. 481-497.https://doi.org/10.1016/B978-0-12-814849-5.00027-7; ISBN 9780128148495
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S. Schulz, A. Schöler, M. Schloter, S. Sharma (2019) The analysis of transcriptomes to assess expression and activity pattern of the soil microbiome. In: Modern Soil Microbiology, edition (ed. J. D. Van Elsas), CRC Press, pp. 245-256. E book ISBN 9780429059186; https://doi.org/10.1201/9780429059186
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S. Dubey, S. Sharma (2019) Rhizospheric microbiome engineering as a sustainable tool in agriculture: Approaches and challenges. In: Microbial Diversity: Environmental Sustainability and Biotechnological Applications (ed. D.P. Singh, H.B. Singh, R. Prabha), Springer, Singapore, pp. 257-272. DOI: 10.1007/978-981-10-5813-4_7; ISBN: 978-981-10-5813-4
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M. Jangir, S. Sharma, S. Sharma (2019) Non-target effects of Trichoderma on plants, and soil microbial communities. In: Plant Microbes Interface (ed. A. Varma, S. Tripathi, R. Prasad) Springer, Cham, pp. 239-251. DOI: 10.1007/978-3-030-19831-2_10; Print ISBN 978-3-030-19830-5
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V. L. Shrivas, U. Singh, L. Weisskopf, P. Hariprasad, S. Sharma (2019) Effect of organic farming on structural and functional diversity of soil microbiome – Benefits and risks. In: Plant Microbes Interface (ed. A. Varma, S. Tripathi, R. Prasad) Springer, Cham, pp. 129-146. DOI: 10.1007/978-3-030-19831-2_10; Print ISBN 978-3-030-19830-5
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R. Sharma, V. S. Bisaria, S. Sharma (2019) Rhizosphere: A home for human pathogens. In: Plant Microbes Interface, (ed. A. Varma, S. Tripathi, R. Prasad) Springer, Cham, pp. 113-127. DOI: 10.1007/978-3-030-19831-2_10; Print ISBN 978-3-030-19830-5
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G. Anand, U. Singh, A. Sain, V. S. Bisaria, S. Sharma (2017) Real-time PCR as a tool towards understanding microbial community dynamics in rhizosphere. In: Advances in PGPR Research (ed. H.B. Singh, B.K. Sarma, C. Keswani) CABI, UK, pp 29-49. DOI 10.1079/9781786390325.0029; ISBN 9781786390325
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R. Sharma, V. S. Bisaria, S. Sharma (2017) Impact of rhizobial inoculants on rhizospheric microbial communities. In: Rhizobium Biology and Biotechnology (ed. A. Hansen, D. K. Choudhary, P.K. Agrawal, A. Varma) Springer Cham, pp. 1-10. DOI: 10.1007/978-3-319-64982-5_1; ISBN: 978-3-319-64982-5
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G. Anand, A. Sain, V. S. Bisaria, S. Sharma (2017) Nucleic acid extraction for studying plant-microbe interactions in rhizosphere. In: Plant-Microbe Interactions in Agro-Ecological Perspectives, Vol. 1. Fundamental Mechanisms, Methods and Functions (ed. D. P. Singh, H.B. Singh, R. Prabha), Springer, Singapore, pp. 127-142. DOI: 10.1007/978-981-10-5813-4_7; ISBN: 978-981-10-5813-4
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S. Sharma, R. Sharma, R. Gupta, V. S. Bisaria (2016) Revisiting action of bioinoculants: their impact on rhizospheric microbial community function. In Microbial Inoculants in Sustainable Agricultural Productivity, Vol II Functional applications (ed D. P. Singh), Springer, New Delhi, pp 41-51. DOI: 10.1007/978-81-322-2644-4_3; ISBN: 978-81-322-2644-4
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S. Mutturi, V. Sahai, S. Sharma, V. S. Bisaria (2016) Strategies for high-density cultivation of bio-inoculants in submerged culture with special reference to pseudomonads. In Microbial Inoculants in Sustainable Agricultural Productivity, Vol I Research Perspectives (ed. D. P. Singh), Springer, New Delhi, pp 181-196. DOI: 10.1007/978-81-322-2647-5_10; ISBN: 978-81-322-2647-5
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S. Sharma, R. Gupta, G. Dugar, A. K. Srivastava (2012) Impact of application of biofertilizers on soil structure and resident microbial community structure and function. In: Bacteria in Agrobiology: Plant Probiotics (ed. D.K. Maheshwari), Springer, Berlin, Heidelberg, pp. 65-77. DOI: 10.1007/978-3-642-27515-9_4; Print ISBN 978-3-642-27514-2
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N. Patra, S. Sharma, A. K. Srivastava, (2011) Statistical media optimization for enhanced biomass and Artemisinin production in Artemisia annua hairy roots. In: Chemistry of Phytopotentials: Health Energy and Environment Perspectives, (eds. M.M. Srivastava, L.D. Khemani, S. Srivastava) Springer, Berlin, Heidelberg, pp. 173-176. DOI: 10.1007/978-3-642-23394-4_37; Print ISBN: 978-3-642-23393-7
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S. Sharma, H. Karl, M. Schloter (2006) Genomic analyses of microbial processes in biogeochemical cycles. In: Molecular Approaches to Soil, Rhizosphere and Plant Microorganism Analysis (ed. J.E. Copper and J.R. Rao) CABI Publishing, UK, pp. 1-17. DOI 10.1079/9781845930622.0000; ISBN 9781845930622
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S. Sharma, M. K. Aneja, M. Schloter (2006) Functional characterization of soil microbial communities by mRNA analysis. In: Modern Soil Microbiology, 2nd edition (ed. J. D. Van Elsas, J.T. Trevors, J.K. Jansson, P. Nannipieri), Boca Raton: Taylor & Francis, pp. 337-352. eBook ISBN9780429196300
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Patents / Technology Transfer
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Shilpi Sharma, Subhash Chand (2015), Patent granted, Application No. 3825/DEL/2015 (Indian Patent Office).
"A METHOD OF ENHANCING GROWTH OF A PROBIOTIC BACTERIAL STRAIN, REAGENTS, COMPOSITIONS AND USES THEREOF" -
Technology Transferred to Nagarjuna Fertilizers and Chemicals Ltd., 2014, entitled "PROCESS TECHNOLOGY FOR MASS MULTIPLICATION OF PGPR STRAINS R62 AND R81"
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